simplot version 3.5.1 Search Results


90
Simplot Science version 3.5.1 program
Version 3.5.1 Program, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/version 3.5.1 program/product/Simplot Science
Average 90 stars, based on 1 article reviews
version 3.5.1 program - by Bioz Stars, 2026-03
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90
Simplot Science software version 3.5.1
Sequence similarity scanning and recombination analysis of deltacoronaviruses from the cloaca of birds. A Sequence similarity scanning of the 6 coronavirus genomes against the related coronavirus genomes within Deltacoronavirus genus using Simplot software version 3.5.1. Different strains are presented by lines in different colors which are shown on the right side. B Bayesian inference trees based on putative exchanged genomic regions. The stain names of genomes acquired here are marked with red color. Each scale bar indicates the amino acid substitutions per site
Software Version 3.5.1, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/software version 3.5.1/product/Simplot Science
Average 90 stars, based on 1 article reviews
software version 3.5.1 - by Bioz Stars, 2026-03
90/100 stars
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90
Simplot Science bootscan analysis simplot program version 3.5.1
<t>Bootscan</t> analysis of recombinant CAstV sequences for confirming recombination was performed using Simplot program v3.5.1. Each analysis considers different parent sequences (different colors) plotted in a graph considering in the vertical-axis Percentage of permuted trees, and on the horizontal axis, position on the genome of the query sequence. Recombinant CAstV query sequences are 19-0981/CA-SK/19 ; Biii-ANAND/IN/2016 ; Bi-GDYHTJ718-6/CN/2018 ; 18-0942/CA-SK/18 ; 19-0935/CA-SK/19 ; CC_CkAstV/US/2014 ; and Bii-GA2011/US/2011 .
Bootscan Analysis Simplot Program Version 3.5.1, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/bootscan analysis simplot program version 3.5.1/product/Simplot Science
Average 90 stars, based on 1 article reviews
bootscan analysis simplot program version 3.5.1 - by Bioz Stars, 2026-03
90/100 stars
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90
Simplot Science recombination analysis software simplot version 3.5.1
<t>Bootscan</t> analysis of recombinant CAstV sequences for confirming recombination was performed using Simplot program v3.5.1. Each analysis considers different parent sequences (different colors) plotted in a graph considering in the vertical-axis Percentage of permuted trees, and on the horizontal axis, position on the genome of the query sequence. Recombinant CAstV query sequences are 19-0981/CA-SK/19 ; Biii-ANAND/IN/2016 ; Bi-GDYHTJ718-6/CN/2018 ; 18-0942/CA-SK/18 ; 19-0935/CA-SK/19 ; CC_CkAstV/US/2014 ; and Bii-GA2011/US/2011 .
Recombination Analysis Software Simplot Version 3.5.1, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/recombination analysis software simplot version 3.5.1/product/Simplot Science
Average 90 stars, based on 1 article reviews
recombination analysis software simplot version 3.5.1 - by Bioz Stars, 2026-03
90/100 stars
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Simplot Science kimura (two-parameter) distance model simplot version 3.5.1
<t>Bootscan</t> analysis of recombinant CAstV sequences for confirming recombination was performed using Simplot program v3.5.1. Each analysis considers different parent sequences (different colors) plotted in a graph considering in the vertical-axis Percentage of permuted trees, and on the horizontal axis, position on the genome of the query sequence. Recombinant CAstV query sequences are 19-0981/CA-SK/19 ; Biii-ANAND/IN/2016 ; Bi-GDYHTJ718-6/CN/2018 ; 18-0942/CA-SK/18 ; 19-0935/CA-SK/19 ; CC_CkAstV/US/2014 ; and Bii-GA2011/US/2011 .
Kimura (Two Parameter) Distance Model Simplot Version 3.5.1, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/kimura (two-parameter) distance model simplot version 3.5.1/product/Simplot Science
Average 90 stars, based on 1 article reviews
kimura (two-parameter) distance model simplot version 3.5.1 - by Bioz Stars, 2026-03
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90
Simplot Science software version v.3.5.1
<t>Bootscan</t> analysis of recombinant CAstV sequences for confirming recombination was performed using Simplot program v3.5.1. Each analysis considers different parent sequences (different colors) plotted in a graph considering in the vertical-axis Percentage of permuted trees, and on the horizontal axis, position on the genome of the query sequence. Recombinant CAstV query sequences are 19-0981/CA-SK/19 ; Biii-ANAND/IN/2016 ; Bi-GDYHTJ718-6/CN/2018 ; 18-0942/CA-SK/18 ; 19-0935/CA-SK/19 ; CC_CkAstV/US/2014 ; and Bii-GA2011/US/2011 .
Software Version V.3.5.1, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/software version v.3.5.1/product/Simplot Science
Average 90 stars, based on 1 article reviews
software version v.3.5.1 - by Bioz Stars, 2026-03
90/100 stars
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90
Simplot Science software 3.5.1 version
<t>Bootscan</t> analysis of recombinant CAstV sequences for confirming recombination was performed using Simplot program v3.5.1. Each analysis considers different parent sequences (different colors) plotted in a graph considering in the vertical-axis Percentage of permuted trees, and on the horizontal axis, position on the genome of the query sequence. Recombinant CAstV query sequences are 19-0981/CA-SK/19 ; Biii-ANAND/IN/2016 ; Bi-GDYHTJ718-6/CN/2018 ; 18-0942/CA-SK/18 ; 19-0935/CA-SK/19 ; CC_CkAstV/US/2014 ; and Bii-GA2011/US/2011 .
Software 3.5.1 Version, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/software 3.5.1 version/product/Simplot Science
Average 90 stars, based on 1 article reviews
software 3.5.1 version - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier

Image Search Results


Sequence similarity scanning and recombination analysis of deltacoronaviruses from the cloaca of birds. A Sequence similarity scanning of the 6 coronavirus genomes against the related coronavirus genomes within Deltacoronavirus genus using Simplot software version 3.5.1. Different strains are presented by lines in different colors which are shown on the right side. B Bayesian inference trees based on putative exchanged genomic regions. The stain names of genomes acquired here are marked with red color. Each scale bar indicates the amino acid substitutions per site

Journal: Microbiome

Article Title: Virome in the cloaca of wild and breeding birds revealed a diversity of significant viruses

doi: 10.1186/s40168-022-01246-7

Figure Lengend Snippet: Sequence similarity scanning and recombination analysis of deltacoronaviruses from the cloaca of birds. A Sequence similarity scanning of the 6 coronavirus genomes against the related coronavirus genomes within Deltacoronavirus genus using Simplot software version 3.5.1. Different strains are presented by lines in different colors which are shown on the right side. B Bayesian inference trees based on putative exchanged genomic regions. The stain names of genomes acquired here are marked with red color. Each scale bar indicates the amino acid substitutions per site

Article Snippet: A Sequence similarity scanning of the 6 coronavirus genomes against the related coronavirus genomes within Deltacoronavirus genus using Simplot software version 3.5.1.

Techniques: Sequencing, Software, Staining

Bootscan analysis of recombinant CAstV sequences for confirming recombination was performed using Simplot program v3.5.1. Each analysis considers different parent sequences (different colors) plotted in a graph considering in the vertical-axis Percentage of permuted trees, and on the horizontal axis, position on the genome of the query sequence. Recombinant CAstV query sequences are 19-0981/CA-SK/19 ; Biii-ANAND/IN/2016 ; Bi-GDYHTJ718-6/CN/2018 ; 18-0942/CA-SK/18 ; 19-0935/CA-SK/19 ; CC_CkAstV/US/2014 ; and Bii-GA2011/US/2011 .

Journal: Viruses

Article Title: Chicken Astrovirus (CAstV) Molecular Studies Reveal Evidence of Multiple Past Recombination Events in Sequences Originated from Clinical Samples of White Chick Syndrome (WCS) in Western Canada

doi: 10.3390/v12101096

Figure Lengend Snippet: Bootscan analysis of recombinant CAstV sequences for confirming recombination was performed using Simplot program v3.5.1. Each analysis considers different parent sequences (different colors) plotted in a graph considering in the vertical-axis Percentage of permuted trees, and on the horizontal axis, position on the genome of the query sequence. Recombinant CAstV query sequences are 19-0981/CA-SK/19 ; Biii-ANAND/IN/2016 ; Bi-GDYHTJ718-6/CN/2018 ; 18-0942/CA-SK/18 ; 19-0935/CA-SK/19 ; CC_CkAstV/US/2014 ; and Bii-GA2011/US/2011 .

Article Snippet: Putative recombination sequences were further investigated by using Bootscan analysis within the Simplot program version 3.5.1 [ ], using the following parameters: window size = 400 bp; step size = 40 bp; GapStrip = On; Repetitions = 100; Kimura 2-parameter substitution model; T/t = 2; and using the neighbor-joining method [ , , ].

Techniques: Recombinant, Sequencing

CAstV recombinant sequences and parents/parent-like sequences detected by 6 recombination methods in RDP5, ML phylogenetic trees, and  Bootscan analysis  in SimPlot software.

Journal: Viruses

Article Title: Chicken Astrovirus (CAstV) Molecular Studies Reveal Evidence of Multiple Past Recombination Events in Sequences Originated from Clinical Samples of White Chick Syndrome (WCS) in Western Canada

doi: 10.3390/v12101096

Figure Lengend Snippet: CAstV recombinant sequences and parents/parent-like sequences detected by 6 recombination methods in RDP5, ML phylogenetic trees, and Bootscan analysis in SimPlot software.

Article Snippet: Putative recombination sequences were further investigated by using Bootscan analysis within the Simplot program version 3.5.1 [ ], using the following parameters: window size = 400 bp; step size = 40 bp; GapStrip = On; Repetitions = 100; Kimura 2-parameter substitution model; T/t = 2; and using the neighbor-joining method [ , , ].

Techniques: Recombinant, Software, Sequencing